STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38120.1Hypothetical protein. (493 aa)    
Predicted Functional Partners:
EDM38121.1
COG4682 Predicted membrane protein.
 
     0.841
EDM34856.1
Hypothetical protein.
  
     0.715
EDM36469.1
Hypothetical protein; COG4886 Leucine-rich repeat (LRR) protein.
  
     0.705
EDM36975.1
Hypothetical protein; COG0841 Cation/multidrug efflux pump.
  
     0.660
EDM33981.1
Putative outer membrane protein; Probably involved in nutrient binding.
  
     0.623
EDM35585.1
Putative outer membrane protein; Probably involved in nutrient binding.
  
     0.618
EDM35577.1
COG1524 Uncharacterized proteins of the AP superfamily.
  
     0.605
EDM33978.1
Probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.604
EDM37846.1
Hypothetical protein.
  
     0.588
EDM33977.1
Hypothetical protein.
  
     0.574
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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