STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38274.1COG2086 Electron transfer flavoprotein, beta subunit. (245 aa)    
Predicted Functional Partners:
EDM38273.1
COG2025 Electron transfer flavoprotein, alpha subunit.
 0.999
EDM35904.1
COG1960 Acyl-CoA dehydrogenases.
 
 0.976
EDM35722.1
COG1960 Acyl-CoA dehydrogenases.
 
 0.975
EDM37569.1
bytyryl-CoA dehydrogenase (short-chain-acyl-CoA dehydrogenase); COG1960 Acyl-CoA dehydrogenases.
 
 0.975
EDM34243.1
COG1960 Acyl-CoA dehydrogenases.
 
 0.969
EDM33915.1
COG1960 Acyl-CoA dehydrogenases.
 
 0.948
EDM35724.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.934
EDM38370.1
Glutamate synthase, small subunit; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
   
 
 0.930
EDM35929.1
Hypothetical protein; COG1960 Acyl-CoA dehydrogenases.
 
 0.927
EDM37282.1
Very long chain acyl-CoA dehydrogenase-related protein; COG1960 Acyl-CoA dehydrogenases.
 
 0.925
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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