Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM38354.1Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (186 aa)    
Predicted Functional Partners:
EDM38353.1
Hypothetical protein.
       0.773
EDM38352.1
Hypothetical protein.
       0.545
EDM36552.1
Putative glycoprotease family exported protein; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
  
 
 0.497
EDM36164.1
Putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
   
 0.496
EDM34158.1
COG2049 Allophanate hydrolase subunit 1.
     
  0.431
EDM36754.1
Putative periplasmic protein.
  
   0.429
EDM34658.1
COG4206 Outer membrane cobalamin receptor protein.
  
     0.406
EDM38346.1
Hypothetical protein.
   
  0.403
EDM33904.1
COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.400
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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