STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38437.1Lipase/Acylhydrolase; COG2755 Lysophospholipase L1 and related esterases. (222 aa)    
Predicted Functional Partners:
EDM38435.1
Putative permease domain protein; COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
 
     0.938
EDM38436.1
ABC transporter related protein; COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component.
 
     0.922
EDM38438.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.773
EDM35724.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
     
 0.580
EDM38434.1
Hypothetical protein.
       0.540
EDM38439.1
HAD-superfamily hydrolase, subfamily IIB; COG0380 Trehalose-6-phosphate synthase.
       0.527
EDM36287.1
Cell wall surface anchor family protein; COG0419 ATPase involved in DNA repair.
   
  0.436
EDM35230.1
Phage related tail fiber protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
   
  0.436
EDM37703.1
Glycoside hydrolase family 2, sugar binding protein.
   
  0.436
EDM35122.1
Putative glycosyslhydrolase; COG1012 NAD-dependent aldehyde dehydrogenases.
   
  0.436
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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