STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34185.1Hypothetical protein. (378 aa)    
Predicted Functional Partners:
EDM34184.1
COG4206 Outer membrane cobalamin receptor protein.
 
    0.950
EDM38198.1
Putative cell surface protein; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
    0.933
EDM34186.1
Potassium-transporting ATPase subunit A.
 
    0.896
EDM38367.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
  0.686
EDM38368.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
  0.686
EDM38369.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
  0.686
guaB
IMP dehydrogenase/GMP reductase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.629
EDM34945.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1.
   
  0.613
EDM38197.1
Hypothetical protein.
 
    
0.596
EDM37319.1
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
  
  0.587
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.