STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35612.1Glycosyl transferase; COG0436 Aspartate/tyrosine/aromatic aminotransferase. (316 aa)    
Predicted Functional Partners:
EDM35613.1
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.950
EDM35244.1
Hypothetical protein.
  
     0.653
EDM35614.1
COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase.
       0.652
EDM36145.1
Hypothetical protein; COG1011 Predicted hydrolase (HAD superfamily).
  
     0.648
EDM35862.1
Hypothetical protein.
  
     0.640
EDM37424.1
Hypothetical protein.
  
     0.639
EDM34605.1
Hypothetical protein; COG1280 Putative threonine efflux protein.
  
     0.611
EDM34107.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.604
EDM37894.1
COG4876 Uncharacterized protein conserved in bacteria.
  
     0.590
EDM35509.1
COG4529 Uncharacterized protein conserved in bacteria.
  
     0.558
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.