STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35722.1COG1960 Acyl-CoA dehydrogenases. (596 aa)    
Predicted Functional Partners:
EDM35724.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.997
EDM35723.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.991
EDM38273.1
COG2025 Electron transfer flavoprotein, alpha subunit.
 0.978
EDM38274.1
COG2086 Electron transfer flavoprotein, beta subunit.
 
 0.975
EDM35727.1
long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase); COG1022 Long-chain acyl-CoA synthetases (AMP-forming).
  
 0.951
EDM36567.1
AMP-binding enzyme, putative; COG1022 Long-chain acyl-CoA synthetases (AMP-forming).
  
 0.925
EDM34445.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.880
EDM35725.1
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
 
  
  0.872
EDM38175.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.850
EDM36399.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.836
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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