STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36995.1Hypothetical protein. (350 aa)    
Predicted Functional Partners:
EDM36996.1
CHU large protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
     0.960
EDM36994.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
     0.945
EDM38508.1
CHU large protein; uncharacterized.
  
     0.723
EDM36645.1
Hypothetical protein.
  
     0.713
EDM34872.1
Hypothetical protein.
  
     0.710
EDM36992.1
Hypothetical protein.
  
     0.709
EDM38285.1
Possible outer membrane protein; COG0457 FOG: TPR repeat.
  
     0.701
EDM36643.1
CHU large protein; uncharacterized.
  
     0.694
EDM34446.1
Hypothetical protein.
  
     0.688
EDM37446.1
PKD; COG3291 FOG: PKD repeat.
 
     0.686
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.