STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM37003.1rteB, two-component system response regulator; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (442 aa)    
Predicted Functional Partners:
EDM37808.1
MCP methyltransferase, CheR-type; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
 0.938
EDM36400.1
rteB, two-component system response regulator; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
  
  
 
0.928
EDM37802.1
Two-component hybrid sensor and regulator; COG2202 FOG: PAS/PAC domain.
 
 0.920
EDM36391.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
  
 0.851
EDM36206.1
COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
 
 0.838
EDM36543.1
RNA polymerase, sigma-54 factor; COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog.
 
  
 0.809
EDM37112.1
Multi-sensor hybrid histidine kinase; COG2203 FOG: GAF domain.
  
 0.785
EDM33940.1
Sensor histidine kinase/response regulator fusion protein; COG0642 Signal transduction histidine kinase.
  
0.764
EDM37116.1
GAF sensor hybrid histidine kinase; COG2203 FOG: GAF domain.
  
 0.757
EDM35181.1
PAS; COG2203 FOG: GAF domain.
  
 0.757
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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