STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM37049.1Putative regulatory protein. (301 aa)    
Predicted Functional Partners:
EDM37048.1
Hypothetical protein; COG4928 Predicted P-loop ATPase.
       0.773
EDM37047.1
Conserved protein found in conjugate transposon; COG3451 Type IV secretory pathway, VirB4 components.
 
     0.772
EDM37041.1
Hypothetical protein.
 
     0.719
EDM37042.1
Conserved transmembrane protein found in conjugative transposon.
 
     0.604
EDM37043.1
Conserved protein found in conjugate transposon; COG2205 Osmosensitive K+ channel histidine kinase.
 
     0.553
EDM37045.1
Conjugative transposon protein TraI; COG0098 Ribosomal protein S5.
 
     0.543
EDM37044.1
Hypothetical protein.
 
     0.494
EDM37046.1
Hypothetical protein.
       0.494
EDM34883.1
Outer membrane receptor; ragA protein.
  
     0.490
EDM34550.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.479
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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