STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM37171.1Hypothetical protein. (399 aa)    
Predicted Functional Partners:
EDM38229.1
Lipopolysaccharide biosynthesis; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.973
EDM38324.1
Putative tyrosine-protein kinase in cps region; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.973
EDM34781.1
Putative tyrosine-protein kinase in cps region; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.973
EDM37123.1
Tyrosine-protein kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.973
EDM37297.1
COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
     0.768
EDM37164.1
COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism.
 
     0.763
EDM37299.1
Hypothetical protein.
  
     0.759
EDM37166.1
Hypothetical protein.
  
     0.758
EDM37300.1
Hypothetical protein.
 
     0.752
EDM37173.1
Putative capsular polysaccharide biosynthesis protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
 
 0.750
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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