STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM37239.1Probable polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid. (443 aa)    
Predicted Functional Partners:
EDM37238.1
Hypothetical protein.
       0.783
EDM37237.1
Probable haloacid dehalogenase-like hydrolase; COG1011 Predicted hydrolase (HAD superfamily).
       0.761
EDM37236.1
COG0035 Uracil phosphoribosyltransferase.
       0.746
EDM37242.1
Sugar transferase; COG1216 Predicted glycosyltransferases.
 
    0.724
EDM37241.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
 
     0.716
EDM35608.1
COG1004 Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.651
EDM37390.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.650
EDM37810.1
Glf protein; COG0562 UDP-galactopyranose mutase.
  
  
 0.646
EDM37235.1
Hypothetical protein.
       0.612
EDM38229.1
Lipopolysaccharide biosynthesis; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.491
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.