Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDM34089.1 | EDM34090.1 | PBAL39_05753 | PBAL39_05758 | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | COG0226 ABC-type phosphate transport system, periplasmic component. | 0.964 |
EDM34089.1 | EDM34091.1 | PBAL39_05753 | PBAL39_05763 | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | Hypothetical protein. | 0.711 |
EDM34089.1 | EDM34092.1 | PBAL39_05753 | PBAL39_05768 | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.915 |
EDM34089.1 | EDM34093.1 | PBAL39_05753 | PBAL39_05773 | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | COG0848 Biopolymer transport protein. | 0.920 |
EDM34089.1 | EDM34094.1 | PBAL39_05753 | PBAL39_05778 | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | Hypothetical protein; COG0459 Chaperonin GroEL (HSP60 family). | 0.927 |
EDM34089.1 | EDM34095.1 | PBAL39_05753 | PBAL39_05783 | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | COG0811 Biopolymer transport proteins. | 0.892 |
EDM34089.1 | EDM36129.1 | PBAL39_05753 | PBAL39_19639 | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.556 |
EDM34090.1 | EDM34089.1 | PBAL39_05758 | PBAL39_05753 | COG0226 ABC-type phosphate transport system, periplasmic component. | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | 0.964 |
EDM34090.1 | EDM34091.1 | PBAL39_05758 | PBAL39_05763 | COG0226 ABC-type phosphate transport system, periplasmic component. | Hypothetical protein. | 0.722 |
EDM34090.1 | EDM34092.1 | PBAL39_05758 | PBAL39_05768 | COG0226 ABC-type phosphate transport system, periplasmic component. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.890 |
EDM34090.1 | EDM34093.1 | PBAL39_05758 | PBAL39_05773 | COG0226 ABC-type phosphate transport system, periplasmic component. | COG0848 Biopolymer transport protein. | 0.927 |
EDM34090.1 | EDM34094.1 | PBAL39_05758 | PBAL39_05778 | COG0226 ABC-type phosphate transport system, periplasmic component. | Hypothetical protein; COG0459 Chaperonin GroEL (HSP60 family). | 0.928 |
EDM34090.1 | EDM34095.1 | PBAL39_05758 | PBAL39_05783 | COG0226 ABC-type phosphate transport system, periplasmic component. | COG0811 Biopolymer transport proteins. | 0.917 |
EDM34090.1 | EDM36129.1 | PBAL39_05758 | PBAL39_19639 | COG0226 ABC-type phosphate transport system, periplasmic component. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.481 |
EDM34091.1 | EDM34089.1 | PBAL39_05763 | PBAL39_05753 | Hypothetical protein. | TPR repeat-containing protein; COG0457 FOG: TPR repeat. | 0.711 |
EDM34091.1 | EDM34090.1 | PBAL39_05763 | PBAL39_05758 | Hypothetical protein. | COG0226 ABC-type phosphate transport system, periplasmic component. | 0.722 |
EDM34091.1 | EDM34092.1 | PBAL39_05763 | PBAL39_05768 | Hypothetical protein. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.846 |
EDM34091.1 | EDM34093.1 | PBAL39_05763 | PBAL39_05773 | Hypothetical protein. | COG0848 Biopolymer transport protein. | 0.779 |
EDM34091.1 | EDM34094.1 | PBAL39_05763 | PBAL39_05778 | Hypothetical protein. | Hypothetical protein; COG0459 Chaperonin GroEL (HSP60 family). | 0.822 |
EDM34091.1 | EDM34095.1 | PBAL39_05763 | PBAL39_05783 | Hypothetical protein. | COG0811 Biopolymer transport proteins. | 0.710 |
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