STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35489.1Putative outer membrane protein; Probably involved in nutrient binding. (525 aa)    
Predicted Functional Partners:
EDM35488.1
Probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
 
     0.917
EDM35490.1
COG1785 Alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
     0.880
EDM35630.1
Putative outer membrane protein; Probably involved in nutrient binding; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
 
   0.643
EDM35478.1
COG1785 Alkaline phosphatase; Belongs to the alkaline phosphatase family.
 
     0.611
EDM35696.1
Hypothetical protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.603
EDM34495.1
Hypothetical protein.
  
 
   0.521
EDM35167.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 
   0.504
EDM38223.1
Hypothetical protein.
  
 
   0.500
EDM38070.1
Probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
 
   0.482
EDM35487.1
Putative anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
     0.481
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.