STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35563.1Hypothetical protein. (244 aa)    
Predicted Functional Partners:
EDM35562.1
Hypothetical protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).
     0.991
EDM35564.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.951
EDM35561.1
Sulfite oxidase cytochrome subunit; COG3258 Cytochrome c.
 
     0.891
EDM35566.1
Hypothetical protein.
 
     0.855
EDM35567.1
COG2259 Predicted membrane protein.
 
     0.851
EDM35560.1
COG2041 Sulfite oxidase and related enzymes.
 
     0.814
EDM38070.1
Probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
 
   0.759
EDM35630.1
Putative outer membrane protein; Probably involved in nutrient binding; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
 
   0.704
EDM34151.1
Putative outer membrane protein; Probably involved in nutrient binding; COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
  
 
   0.704
EDM35002.1
Probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.693
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.