STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM37381.1COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain. (365 aa)    
Predicted Functional Partners:
EDM37382.1
COG1239 Mg-chelatase subunit ChlI.
 
    0.938
EDM37383.1
Phosphohydrolase, MutT family protein; COG1408 Predicted phosphohydrolases.
       0.752
EDM37380.1
JmjC domain protein.
       0.611
mqnB
Hypothetical protein; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2).
    
   0.553
EDM37384.1
Hypothetical protein; COG2610 H+/gluconate symporter and related permeases.
       0.542
EDM36003.1
Hypothetical protein.
  
     0.476
EDM35248.1
COG1846 Transcriptional regulators.
  
     0.452
EDM37379.1
jmjC domain protein.
       0.425
EDM36905.1
COG1846 Transcriptional regulators.
  
     0.403
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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