STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM37526.1COG0666 FOG: Ankyrin repeat. (405 aa)    
Predicted Functional Partners:
EDM36914.1
Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
    
 0.927
EDM37525.1
Ankyrin; COG0666 FOG: Ankyrin repeat.
 
    
0.913
EDM38681.1
Hypothetical protein; COG2319 FOG: WD40 repeat.
    
 0.904
EDM37926.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
    
  0.839
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
  0.835
EDM38241.1
Oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
    
 0.780
EDM34862.1
Oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
    
 0.780
EDM35644.1
Glucose-methanol-choline oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
    
 0.780
EDM37898.1
COG0464 ATPases of the AAA+ class.
    
 0.744
EDM35055.1
COG0659 Sulfate permease and related transporters (MFS superfamily).
    
 
 0.738
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.