STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34489.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
EDM34487.1
Hypothetical protein.
       0.773
EDM34488.1
Putative outer membrane protein; Probably involved in nutrient binding; COG1450 Type II secretory pathway, component PulD.
       0.773
EDM36762.1
Hypothetical protein; COG0280 Phosphotransacetylase.
  
     0.772
EDM34484.1
COG3279 Response regulator of the LytR/AlgR family.
       0.479
EDM34485.1
Signaling protein without kinase domain; COG3275 Putative regulator of cell autolysis.
       0.479
EDM34490.1
Gluconokinase; COG1070 Sugar (pentulose and hexulose) kinases; Belongs to the FGGY kinase family.
       0.448
EDM37328.1
seryl-tRNA synthetase.
  
     0.440
EDM34343.1
Hypothetical protein.
  
     0.409
EDM34481.1
Hypothetical protein.
 
     0.408
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.