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PBAL39_12383 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_12383" - RNA polymerase ECF-type sigma factor in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_12383RNA polymerase ECF-type sigma factor (176 aa)    
Predicted Functional Partners:
PBAL39_03369
Putative anti-sigma factor (349 aa)
 
 
  0.856
PBAL39_12378
Putative anti sigma factor (349 aa)
 
          0.834
PBAL39_07695
Putative anti-sigma factor (392 aa)
 
 
  0.819
PBAL39_03015
Putative anti-sigma factor (338 aa)
 
 
  0.808
PBAL39_09031
Putative anti-sigma factor (332 aa)
 
 
  0.798
PBAL39_18804
Putative anti-sigma factor (339 aa)
 
 
  0.783
PBAL39_18704
Putative anti-sigma factor (321 aa)
 
 
  0.780
PBAL39_16871
Putative anti-sigma factor (343 aa)
 
 
  0.779
PBAL39_07230
Putative anti-sigma factor (325 aa)
 
 
  0.778
PBAL39_13949
Putative anti-sigma factor (344 aa)
 
 
  0.778
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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