STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34299.1Hypothetical protein; COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (153 aa)    
Predicted Functional Partners:
EDM34300.1
Hypothetical protein; COG1466 DNA polymerase III, delta subunit.
 
     0.866
EDM34435.1
Putative type I restriction-modification system, S subunit; COG0732 Restriction endonuclease S subunits.
  
 
 0.791
EDM35763.1
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.771
EDM35282.1
Hypothetical protein.
  
     0.728
EDM34436.1
COG0286 Type I restriction-modification system methyltransferase subunit.
  
 
 0.724
EDM37370.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.710
EDM38786.1
COG1589 Cell division septal protein.
  
     0.687
EDM35684.1
Auxin-regulated protein.
  
     0.669
EDM37076.1
Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.
  
     0.640
EDM34951.1
COG4485 Predicted membrane protein.
  
     0.638
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.