STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34326.1Hypothetical protein; COG2367 Beta-lactamase class A. (293 aa)    
Predicted Functional Partners:
EDM38228.1
COG1538 Outer membrane protein.
  
     0.648
EDM37423.1
Hypothetical protein; COG0442 Prolyl-tRNA synthetase.
 
     0.588
EDM38229.1
Lipopolysaccharide biosynthesis; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
     0.575
EDM38232.1
Putative capsule-related protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
     0.557
EDM37243.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.552
EDM38223.1
Hypothetical protein.
  
     0.486
EDM34327.1
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
       0.485
EDM34328.1
Glutaminase.
       0.485
EDM35423.1
Hypothetical protein.
  
     0.481
EDM38645.1
DinB; COG2318 Uncharacterized protein conserved in bacteria.
  
     0.443
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.