STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35426.1COG3652 Predicted outer membrane protein. (206 aa)    
Predicted Functional Partners:
EDM34277.1
COG3569 Topoisomerase IB.
 
     0.487
EDM35427.1
Transcriptional regulator, AsnC/Lrp family protein; COG1522 Transcriptional regulators.
       0.461
EDM35403.1
Hypothetical protein; COG5637 Predicted integral membrane protein.
  
    0.451
EDM35179.1
COG1793 ATP-dependent DNA ligase.
 
    0.445
EDM33853.1
Hypothetical protein; COG5478 Predicted small integral membrane protein.
  
    0.443
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.