STRINGSTRING
PBAL39_13190 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_13190" - Outer membrane protein in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_13190Outer membrane protein (206 aa)    
Predicted Functional Partners:
PBAL39_15129
Zinc-type alcohol dehydrogenase (385 aa)
 
        0.625
PBAL39_07720
Two-component hybrid sensor and regulator (1253 aa)
   
          0.583
PBAL39_11822
Histidine kinase (1198 aa)
   
          0.559
PBAL39_16896
ATP-dependent DNA ligase (908 aa)
 
          0.551
PBAL39_13075
Uncharacterized protein (231 aa)
 
          0.532
PBAL39_13195
Transcriptional regulator, AsnC/Lrp family protein (154 aa)
              0.514
PBAL39_07465
Putative oxidoreductase protein, short-chain dehydrogenase reductase (SDR)family (295 aa)
 
        0.487
PBAL39_20985
Uncharacterized protein (92 aa)
   
          0.481
PBAL39_12453
DNA topoisomerase IB (355 aa)
 
          0.474
PBAL39_16354
Uncharacterized protein (244 aa)
 
          0.466
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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