STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35437.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
EDM35436.1
COG2259 Predicted membrane protein.
       0.763
EDM35438.1
COG2120 Uncharacterized proteins, LmbE homologs.
       0.722
EDM36019.1
Hypothetical protein.
  
     0.630
EDM35323.1
Hypothetical protein.
  
     0.612
EDM37158.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.585
EDM36302.1
Penicillin-binding protein; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
  
     0.546
EDM35435.1
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.503
EDM38223.1
Hypothetical protein.
  
     0.500
EDM37159.1
Putative outer membrane protein; Probably involved in nutrient binding.
  
     0.497
EDM35440.1
COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.469
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.