STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM33857.1Hypothetical protein. (60 aa)    
Predicted Functional Partners:
EDM33858.1
Helix-turn-helix, AraC type.
 
     0.884
EDM35453.1
Glycoside hydrolase, family 5; COG2730 Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.774
EDM35287.1
COG1331 Highly conserved protein containing a thioredoxin domain.
   
  0.673
EDM38950.1
COG4833 Predicted glycosyl hydrolase.
   
  0.673
EDM38953.1
Hypothetical protein.
   
  0.673
EDM33965.1
Hypothetical protein.
  
 
   0.657
EDM33964.1
Putative outer membrane protein.
  
     0.604
EDM35043.1
B-glycosidase, glycoside hydrolase family 1 protein; COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase.
    
 0.586
EDM35449.1
Hypothetical protein; COG3292 Predicted periplasmic ligand-binding sensor domain.
 
     0.498
EDM36325.1
TM2 domain family protein; COG2314 Predicted membrane protein.
  
     0.442
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.