STRINGSTRING
PBAL39_14004 protein (Pedobacter sp. BAL39) - STRING interaction network
"PBAL39_14004" - TonB-linked outer membrane receptor in Pedobacter sp. BAL39
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBAL39_14004TonB-linked outer membrane receptor (794 aa)    
Predicted Functional Partners:
PBAL39_13999
Uncharacterized protein (402 aa)
 
          0.941
PBAL39_07790
Uncharacterized protein (418 aa)
 
          0.843
PBAL39_20089
Uncharacterized protein (404 aa)
 
          0.819
PBAL39_14019
RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor) (181 aa)
 
          0.767
PBAL39_01282
Uncharacterized protein (355 aa)
   
          0.664
PBAL39_07475
Uncharacterized protein (600 aa)
   
          0.652
PBAL39_22695
Uncharacterized protein (167 aa)
   
          0.651
PBAL39_15219
Uncharacterized protein (414 aa)
   
          0.646
PBAL39_07370
Putative outer membrane protein (1101 aa)
   
          0.644
PBAL39_14009
Uncharacterized protein (412 aa)
              0.625
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39, Pedobacter BAL39, Pedobacter sp. BAL39
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