STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34676.1COG4206 Outer membrane cobalamin receptor protein. (794 aa)    
Predicted Functional Partners:
EDM34675.1
Hypothetical protein.
 
     0.921
EDM34677.1
Hypothetical protein.
 
     0.891
EDM36219.1
Hypothetical protein; COG0021 Transketolase.
 
     0.758
EDM35572.1
Hypothetical protein.
 
     0.738
EDM34674.1
Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.
     0.720
EDM34679.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.594
EDM34319.1
Hypothetical protein.
  
     0.569
EDM37161.1
Putative surface layer protein.
   
  0.545
EDM34678.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
       0.545
EDM34092.1
TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
  0.506
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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