STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34677.1Hypothetical protein. (412 aa)    
Predicted Functional Partners:
EDM34676.1
COG4206 Outer membrane cobalamin receptor protein.
 
     0.891
EDM34678.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
       0.798
EDM34679.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.772
EDM36063.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.719
EDM35660.1
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 
 0.714
EDM34674.1
Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.
 
    0.714
EDM36219.1
Hypothetical protein; COG0021 Transketolase.
  
     0.659
EDM36220.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.654
EDM35573.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.632
EDM37342.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 
 0.629
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.