STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35145.1COG2318 Uncharacterized protein conserved in bacteria. (171 aa)    
Predicted Functional Partners:
EDM38923.1
Hypothetical protein.
 
     0.664
EDM38036.1
Methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.510
EDM35555.1
Putative outer membrane protein; Probably involved in nutrient binding.
  
     0.470
EDM37011.1
Putative outer membrane protein; Probably involved in nutrient binding; COG3421 Uncharacterized protein conserved in bacteria.
  
     0.457
EDM38934.1
Putative lipoprotein.
  
     0.428
EDM35144.1
Possible gluconolactonase precursor; COG3386 Gluconolactonase.
       0.412
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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