STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34020.1COG4272 Predicted membrane protein. (133 aa)    
Predicted Functional Partners:
EDM34019.1
Hypothetical protein; COG0730 Predicted permeases.
 
    0.949
EDM34018.1
Transcriptional regulator for pyruvate dehydrogenase complex, GntR family protein; COG2186 Transcriptional regulators.
       0.867
EDM35092.1
Hypothetical protein; COG0730 Predicted permeases.
 
    0.800
EDM35093.1
Hypothetical protein; COG0730 Predicted permeases.
 
    0.800
EDM34017.1
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
       0.419
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.