STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36736.1Putative anti-sigma regulatory factor, serine/threonine protein kinase; COG2203 FOG: GAF domain. (363 aa)    
Predicted Functional Partners:
EDM36391.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
 
 0.962
EDM33940.1
Sensor histidine kinase/response regulator fusion protein; COG0642 Signal transduction histidine kinase.
  
 0.946
EDM33942.1
Signal transduction histidine kinase; COG0784 FOG: CheY-like receiver.
 0.921
EDM37802.1
Two-component hybrid sensor and regulator; COG2202 FOG: PAS/PAC domain.
 
 0.858
EDM34183.1
Sensory box histidine kinase/response regulator; COG2202 FOG: PAS/PAC domain.
  
  0.851
EDM35181.1
PAS; COG2203 FOG: GAF domain.
 
 
0.786
EDM37116.1
GAF sensor hybrid histidine kinase; COG2203 FOG: GAF domain.
 
 
0.785
EDM37808.1
MCP methyltransferase, CheR-type; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
 0.785
EDM36737.1
PecM-related protein; COG5006 Predicted permease, DMT superfamily.
       0.773
EDM35866.1
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
 0.757
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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