STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36963.1Probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport. (1018 aa)    
Predicted Functional Partners:
EDM36966.1
Putative outer membrane protein; Probably involved in nutrient binding.
 
     0.936
EDM36962.1
Putative outer membrane protein; Probably involved in nutrient binding.
 
     0.923
EDM36969.1
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
 
     0.778
EDM37351.1
Putative outer membrane protein; Probably involved in nutrient binding.
  
     0.751
EDM36970.1
COG0383 Alpha-mannosidase.
 
     0.750
EDM35855.1
Putative outer membrane protein; Probably involved in nutrient binding.
  
     0.738
EDM36975.1
Hypothetical protein; COG0841 Cation/multidrug efflux pump.
  
     0.735
EDM36201.1
Putative outer membrane protein; Probably involved in nutrient binding; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.730
EDM34754.1
Hypothetical protein.
  
     0.724
EDM35127.1
Putative outer membrane protein; Probably involved in nutrient binding.
  
     0.695
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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