STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36118.1Putative short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (295 aa)    
Predicted Functional Partners:
EDM38251.1
Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 
 0.654
EDM37792.1
Short-chain dehydrogenase/reductase SDR; COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.600
EDM38252.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
   
 0.592
EDM36230.1
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
  0.583
EDM36911.1
Putative short-chain dehydrogenase/oxidoreductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
  0.560
EDM36117.1
Hypothetical protein.
  
    0.551
EDM36626.1
Chalcone/stilbene synthase family protein; COG3424 Predicted naringenin-chalcone synthase.
    
  0.454
EDM36119.1
Hypothetical protein.
       0.445
EDM34211.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
0.444
EDM37683.1
Putative dihydroflavonol-4-reductase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 
   0.435
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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