STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36177.1Putative glycosyltransferase. (286 aa)    
Predicted Functional Partners:
EDM36178.1
Hypothetical protein; COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes.
 
 
  0.882
EDM36179.1
Sugar pyridoxal-phosphate-dependent aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.837
EDM36176.1
Hypothetical protein.
       0.710
EDM36180.1
Hypothetical protein.
       0.682
EDM36181.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.669
EDM36182.1
Putative FecR; COG3712 Fe2+-dicitrate sensor, membrane component.
       0.660
EDM36184.1
Hypothetical protein.
       0.653
EDM36183.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.637
EDM33916.1
Hypothetical protein; COG3408 Glycogen debranching enzyme.
  
 
  0.606
EDM38439.1
HAD-superfamily hydrolase, subfamily IIB; COG0380 Trehalose-6-phosphate synthase.
  
 0.581
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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