STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36187.1Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (286 aa)    
Predicted Functional Partners:
EDM36186.1
Sugar isomerase (SIS); COG0794 Predicted sugar phosphate isomerase involved in capsule formation.
 
     0.793
EDM36185.1
COG0269 3-hexulose-6-phosphate synthase and related proteins.
 
     0.735
EDM37735.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.614
EDM38099.1
Putative AraC-family regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.594
EDM36112.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.577
EDM37828.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.513
EDM34298.1
Transcription regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.500
EDM36188.1
FeS assembly protein SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.482
EDM36189.1
Component of SufBCD complex; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.482
EDM36190.1
Iron-regulated ABC transporter, ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
       0.426
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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