STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38497.1Hypothetical protein. (528 aa)    
Predicted Functional Partners:
EDM37618.1
COG3325 Chitinase.
  
  
  0.783
EDM38834.1
Hypothetical protein; COG2273 Beta-glucanase/Beta-glucan synthetase.
  
     0.767
EDM36821.1
Hypothetical protein.
  
     0.726
EDM35226.1
COG3209 Rhs family protein.
 
 
  0.712
EDM34177.1
Probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.689
EDM35570.1
Hypothetical protein; COG1626 Neutral trehalase.
  
     0.660
EDM36822.1
Hypothetical protein.
  
     0.642
EDM36738.1
Putative DNA mismatch repair protein; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
  
     0.627
EDM36975.1
Hypothetical protein; COG0841 Cation/multidrug efflux pump.
  
     0.600
EDM37766.1
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
  
     0.592
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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