STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38518.1Hypothetical protein; COG1983 Putative stress-responsive transcriptional regulator. (73 aa)    
Predicted Functional Partners:
EDM37112.1
Multi-sensor hybrid histidine kinase; COG2203 FOG: GAF domain.
   
   0.968
EDM38519.1
Hypothetical protein.
       0.876
EDM37157.1
COG0642 Signal transduction histidine kinase.
   
   0.843
EDM35866.1
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
   
   0.843
EDM34183.1
Sensory box histidine kinase/response regulator; COG2202 FOG: PAS/PAC domain.
  
   0.842
EDM38521.1
COG0284 Orotidine-5'-phosphate decarboxylase.
       0.815
EDM34956.1
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
   
   0.796
EDM37197.1
COG0642 Signal transduction histidine kinase.
   
   0.796
EDM38009.1
COG0642 Signal transduction histidine kinase.
   
   0.796
EDM36646.1
Multisensor diguanylate cyclase/phosphodiesterase; COG2202 FOG: PAS/PAC domain.
   
   0.796
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.