node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDM38535.1 | def | PBAL39_20720 | PBAL39_11357 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.977 |
EDM38535.1 | rplF | PBAL39_20720 | PBAL39_08350 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.976 |
EDM38535.1 | rplW | PBAL39_20720 | PBAL39_08415 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.994 |
EDM38535.1 | rplX | PBAL39_20720 | PBAL39_08370 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.987 |
EDM38535.1 | rpmC | PBAL39_20720 | PBAL39_08385 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.990 |
EDM38535.1 | rpsB | PBAL39_20720 | PBAL39_10641 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.977 |
EDM38535.1 | rpsC | PBAL39_20720 | PBAL39_08395 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.977 |
EDM38535.1 | rpsG | PBAL39_20720 | PBAL39_08460 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
EDM38535.1 | rpsK | PBAL39_20720 | PBAL39_08300 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.978 |
EDM38535.1 | rpsU | PBAL39_20720 | PBAL39_06976 | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.984 |
def | EDM38535.1 | PBAL39_11357 | PBAL39_20720 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). | 0.977 |
def | rplF | PBAL39_11357 | PBAL39_08350 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.969 |
def | rplW | PBAL39_11357 | PBAL39_08415 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.969 |
def | rplX | PBAL39_11357 | PBAL39_08370 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.969 |
def | rpmC | PBAL39_11357 | PBAL39_08385 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.969 |
def | rpsB | PBAL39_11357 | PBAL39_10641 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.970 |
def | rpsC | PBAL39_11357 | PBAL39_08395 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.972 |
def | rpsG | PBAL39_11357 | PBAL39_08460 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.969 |
def | rpsK | PBAL39_11357 | PBAL39_08300 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.969 |
def | rpsU | PBAL39_11357 | PBAL39_06976 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.976 |