STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38552.1COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain). (194 aa)    
Predicted Functional Partners:
EDM38553.1
uroporphyrin-III C-methyltransferase (uroporphyrinogen III methylase); COG0007 Uroporphyrinogen-III methylase; Belongs to the precorrin methyltransferase family.
 
 0.993
EDM38642.1
uroporphyrin-III C-methyltransferase (uroporphyrinogen III methylase); COG0007 Uroporphyrinogen-III methylase; Belongs to the precorrin methyltransferase family.
 
 0.993
EDM37000.1
uroporphyrin-III C-methyltransferase (uroporphyrinogen III methylase); COG0007 Uroporphyrinogen-III methylase.
 
 0.986
EDM38554.1
COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
 
 0.929
EDM38376.1
ABC transporter, permease component; COG0730 Predicted permeases.
      0.900
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
 
 0.885
EDM38551.1
Phosphoadenosine phosphosulphate reductase; Reduction of activated sulfate into sulfite.
 
  
 0.872
EDM38550.1
Phosphoadenylyl-sulfate reductase; COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes.
  
  
 0.848
EDM38549.1
Sulfate adenylyltransferase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.818
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; COG0001 Glutamate-1-semialdehyde aminotransferase.
  
 0.764
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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