STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM38565.1Hypothetical protein. (483 aa)    
Predicted Functional Partners:
EDM38566.1
COG2307 Uncharacterized protein conserved in bacteria.
  
 0.994
EDM38567.1
COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
 
    0.960
EDM37249.1
Uncharacterized enzyme; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
  0.943
EDM38563.1
COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
 
    0.894
EDM38564.1
COG3484 Predicted proteasome-type protease.
 
  
 0.852
EDM38338.1
Hypothetical protein; COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase).
    
  0.570
EDM34943.1
Pyridoxal phosphate-dependent amino acid decarboxylase; COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
    
  0.416
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.