STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM35990.1COG3637 Opacity protein and related surface antigens. (279 aa)    
Predicted Functional Partners:
EDM35991.1
Hypothetical protein.
    
  0.886
EDM35992.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.873
EDM35995.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.797
EDM35050.1
Hypothetical protein.
 
     0.772
EDM37227.1
Hypothetical protein.
  
     0.761
EDM36145.1
Hypothetical protein; COG1011 Predicted hydrolase (HAD superfamily).
  
     0.761
pyrE
Orotate phosphoribosyltransferase.
  
     0.746
EDM37371.1
Hypothetical protein.
  
     0.740
EDM36452.1
Hypothetical protein.
  
     0.740
EDM34613.1
COG2911 Uncharacterized protein conserved in bacteria.
  
     0.740
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.