STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36014.1Probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins. (1210 aa)    
Predicted Functional Partners:
EDM37161.1
Putative surface layer protein.
  
 0.917
EDM36013.1
Putative lipoprotein.
 
 
   0.891
EDM37482.1
TonB; COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component.
  
 
0.876
EDM34092.1
TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  0.875
EDM35753.1
Hypothetical protein.
  
  0.875
EDM36129.1
TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  0.875
EDM34107.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
  0.875
EDM34178.1
Hypothetical protein.
  
 
   0.803
EDM37999.1
Hypothetical protein.
  
 
   0.799
EDM34115.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
 
   0.794
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.