STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34583.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
EDM34584.1
Chromosome partitioning protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
       0.876
EDM34585.1
Regulator protein; COG1192 ATPases involved in chromosome partitioning.
       0.873
EDM34581.1
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.797
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.759
EDM34586.1
NADPH-dependent FMN reductase; COG0431 Predicted flavoprotein.
       0.662
EDM38153.1
Hypothetical protein.
  
    0.573
EDM35448.1
Hypothetical protein.
  
     0.496
EDM34383.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
    0.469
EDM35889.1
Hypothetical protein.
  
     0.440
EDM35807.1
Hypothetical protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.413
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.