STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM34122.1COG0457 FOG: TPR repeat. (467 aa)    
Predicted Functional Partners:
EDM36391.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
  
 0.996
EDM33940.1
Sensor histidine kinase/response regulator fusion protein; COG0642 Signal transduction histidine kinase.
  
 0.988
EDM37808.1
MCP methyltransferase, CheR-type; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
    
 0.979
ribBA
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.963
EDM37802.1
Two-component hybrid sensor and regulator; COG2202 FOG: PAS/PAC domain.
 
 0.962
EDM38681.1
Hypothetical protein; COG2319 FOG: WD40 repeat.
 
 
 0.935
alaS-2
alanine--tRNA ligase (alanyl-tRNA synthetase); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.888
EDM35748.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
 0.842
EDM37116.1
GAF sensor hybrid histidine kinase; COG2203 FOG: GAF domain.
   
 0.821
EDM35181.1
PAS; COG2203 FOG: GAF domain.
   
 0.821
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.