STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM33970.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
EDM33971.1
C-terminal processing peptidase, tail-specific protease; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
       0.668
EDM33969.1
Hypothetical protein.
       0.529
EDM34719.1
COG3871 Uncharacterized stress protein (general stress protein 26).
  
    0.527
EDM36692.1
COG3871 Uncharacterized stress protein (general stress protein 26).
  
    0.527
EDM33968.1
Hypothetical protein; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
       0.513
EDM33967.1
COG4206 Outer membrane cobalamin receptor protein.
       0.497
EDM35693.1
Hypothetical protein; COG2388 Predicted acetyltransferase.
   
    0.422
EDM34558.1
COG4876 Uncharacterized protein conserved in bacteria.
   
    0.422
EDM37894.1
COG4876 Uncharacterized protein conserved in bacteria.
   
    0.422
EDM34032.1
Acetyltransferase; COG2388 Predicted acetyltransferase.
   
    0.422
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.