STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36583.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
EDM36582.1
Hypothetical protein; COG1092 Predicted SAM-dependent methyltransferases.
 
    
0.888
EDM34372.1
Hypothetical protein.
 
     0.572
EDM36581.1
COG3279 Response regulator of the LytR/AlgR family.
       0.548
EDM36580.1
Diguanylate cyclase/phosphodiesterase; COG3292 Predicted periplasmic ligand-binding sensor domain.
       0.487
EDM35723.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.462
EDM34445.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.462
EDM38852.1
Hypothetical protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
  
     0.447
EDM37085.1
Possible ferrodoxin; COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.
    
   0.444
EDM34144.1
Hypothetical protein; COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain.
    
   0.444
EDM35006.1
Hypothetical protein; COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
  
     0.435
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.