STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM36669.1Outer membrane assembly protein. (422 aa)    
Predicted Functional Partners:
EDM36671.1
Membrane spanning protein, required for outer membrane integrity.
 
     0.976
EDM36996.1
CHU large protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.617
EDM36670.1
Hypothetical protein.
       0.572
EDM37658.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.519
EDM36689.1
COG2357 Uncharacterized protein conserved in bacteria.
  
     0.487
EDM36783.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.461
EDM35939.1
Hypothetical protein.
  
     0.461
EDM35126.1
Probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.428
EDM35696.1
Hypothetical protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.417
EDM34578.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Pedobacter sp. BAL39
NCBI taxonomy Id: 391596
Other names: P. sp. BAL39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.