Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDM36696.1 | EDM36697.1 | PBAL39_25550 | PBAL39_25555 | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | Response regulator; COG0784 FOG: CheY-like receiver. | 0.890 |
EDM36696.1 | EDM36699.1 | PBAL39_25550 | PBAL39_25565 | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | Hypothetical protein. | 0.433 |
EDM36696.1 | EDM36700.1 | PBAL39_25550 | PBAL39_25570 | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | Sensor for ctr capsule biosynthesis; COG2202 FOG: PAS/PAC domain. | 0.481 |
EDM36696.1 | ku | PBAL39_25550 | PBAL39_25560 | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.668 |
EDM36697.1 | EDM36696.1 | PBAL39_25555 | PBAL39_25550 | Response regulator; COG0784 FOG: CheY-like receiver. | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | 0.890 |
EDM36697.1 | EDM36699.1 | PBAL39_25555 | PBAL39_25565 | Response regulator; COG0784 FOG: CheY-like receiver. | Hypothetical protein. | 0.433 |
EDM36697.1 | EDM36700.1 | PBAL39_25555 | PBAL39_25570 | Response regulator; COG0784 FOG: CheY-like receiver. | Sensor for ctr capsule biosynthesis; COG2202 FOG: PAS/PAC domain. | 0.836 |
EDM36697.1 | ku | PBAL39_25555 | PBAL39_25560 | Response regulator; COG0784 FOG: CheY-like receiver. | Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.668 |
EDM36699.1 | EDM36696.1 | PBAL39_25565 | PBAL39_25550 | Hypothetical protein. | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | 0.433 |
EDM36699.1 | EDM36697.1 | PBAL39_25565 | PBAL39_25555 | Hypothetical protein. | Response regulator; COG0784 FOG: CheY-like receiver. | 0.433 |
EDM36699.1 | EDM36700.1 | PBAL39_25565 | PBAL39_25570 | Hypothetical protein. | Sensor for ctr capsule biosynthesis; COG2202 FOG: PAS/PAC domain. | 0.554 |
EDM36699.1 | ku | PBAL39_25565 | PBAL39_25560 | Hypothetical protein. | Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.493 |
EDM36700.1 | EDM36696.1 | PBAL39_25570 | PBAL39_25550 | Sensor for ctr capsule biosynthesis; COG2202 FOG: PAS/PAC domain. | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | 0.481 |
EDM36700.1 | EDM36697.1 | PBAL39_25570 | PBAL39_25555 | Sensor for ctr capsule biosynthesis; COG2202 FOG: PAS/PAC domain. | Response regulator; COG0784 FOG: CheY-like receiver. | 0.836 |
EDM36700.1 | EDM36699.1 | PBAL39_25570 | PBAL39_25565 | Sensor for ctr capsule biosynthesis; COG2202 FOG: PAS/PAC domain. | Hypothetical protein. | 0.554 |
ku | EDM36696.1 | PBAL39_25560 | PBAL39_25550 | Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase). | 0.668 |
ku | EDM36697.1 | PBAL39_25560 | PBAL39_25555 | Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Response regulator; COG0784 FOG: CheY-like receiver. | 0.668 |
ku | EDM36699.1 | PBAL39_25560 | PBAL39_25565 | Hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Hypothetical protein. | 0.493 |