STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM82174.1Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (172 aa)    
Predicted Functional Partners:
EDM82175.1
TRAP dicarboxylate transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
    0.976
EDM82539.1
TRAP dicarboxylate transporter- DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
    0.907
EDM82155.1
Hypothetical protein; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
    0.792
argH
COG0165 Argininosuccinate lyase.
       0.779
EDM82178.1
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.778
EDM82537.1
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.777
EDM84263.1
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.774
EDM82153.1
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.773
EDM82171.1
Bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; COG1587 Uroporphyrinogen-III synthase.
  
    0.528
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.524
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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