STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM84226.1COG1538 Outer membrane protein. (563 aa)    
Predicted Functional Partners:
EDM84227.1
COG0845 Membrane-fusion protein.
 
 0.975
EDM84228.1
ABC-type protease/lipase transport system, ATPase and permease components; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
 
 0.936
EDM84001.1
Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein.
 
 0.893
EDM84002.1
Probable ABC transporter, ATP-binding/permease fusion; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
 
 0.769
EDM83999.1
Type I secretion outer membrane protein, TolC; COG1538 Outer membrane protein.
  
     0.765
EDM84229.1
Hypothetical protein.
       0.746
EDM84230.1
Sigma-24 (FecI-like) protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.746
EDM84619.1
Secretion protein HlyD; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.578
EDM84225.1
Hypothetical protein.
       0.527
EDM83640.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.485
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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