Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDM82067.1 | EDM82068.1 | LMED105_00125 | LMED105_00130 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | COG5314 Conjugal transfer/entry exclusion protein. | 0.989 |
| EDM82067.1 | EDM82070.1 | LMED105_00125 | LMED105_00140 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | trbL protein; COG3846 Type IV secretory pathway, TrbL components. | 0.972 |
| EDM82067.1 | EDM82071.1 | LMED105_00125 | LMED105_00145 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | Conjugal transfer protein F; COG3701 Type IV secretory pathway, TrbF components. | 0.971 |
| EDM82067.1 | EDM82073.1 | LMED105_00125 | LMED105_00155 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | Conjugation TrbI family protein; COG2948 Type IV secretory pathway, VirB10 components. | 0.991 |
| EDM82067.1 | EDM82103.1 | LMED105_00125 | LMED105_00110 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins). | 0.970 |
| EDM82067.1 | EDM82105.1 | LMED105_00125 | LMED105_00120 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | CagE, TrbE, VirB component of type IV transporter system; COG3451 Type IV secretory pathway, VirB4 components. | 0.984 |
| EDM82067.1 | EDM84380.1 | LMED105_00125 | LMED105_02418 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | Hypothetical protein. | 0.934 |
| EDM82067.1 | EDM84582.1 | LMED105_00125 | LMED105_03505 | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | COG4792 Type III secretory pathway, component EscU. | 0.422 |
| EDM82068.1 | EDM82067.1 | LMED105_00130 | LMED105_00125 | COG5314 Conjugal transfer/entry exclusion protein. | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | 0.989 |
| EDM82068.1 | EDM82070.1 | LMED105_00130 | LMED105_00140 | COG5314 Conjugal transfer/entry exclusion protein. | trbL protein; COG3846 Type IV secretory pathway, TrbL components. | 0.954 |
| EDM82068.1 | EDM82071.1 | LMED105_00130 | LMED105_00145 | COG5314 Conjugal transfer/entry exclusion protein. | Conjugal transfer protein F; COG3701 Type IV secretory pathway, TrbF components. | 0.945 |
| EDM82068.1 | EDM82073.1 | LMED105_00130 | LMED105_00155 | COG5314 Conjugal transfer/entry exclusion protein. | Conjugation TrbI family protein; COG2948 Type IV secretory pathway, VirB10 components. | 0.947 |
| EDM82068.1 | EDM82103.1 | LMED105_00130 | LMED105_00110 | COG5314 Conjugal transfer/entry exclusion protein. | Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins). | 0.915 |
| EDM82068.1 | EDM82105.1 | LMED105_00130 | LMED105_00120 | COG5314 Conjugal transfer/entry exclusion protein. | CagE, TrbE, VirB component of type IV transporter system; COG3451 Type IV secretory pathway, VirB4 components. | 0.924 |
| EDM82068.1 | EDM84380.1 | LMED105_00130 | LMED105_02418 | COG5314 Conjugal transfer/entry exclusion protein. | Hypothetical protein. | 0.508 |
| EDM82070.1 | EDM82067.1 | LMED105_00140 | LMED105_00125 | trbL protein; COG3846 Type IV secretory pathway, TrbL components. | Probable conjugal transfer protein TrbE; COG3451 Type IV secretory pathway, VirB4 components. | 0.972 |
| EDM82070.1 | EDM82068.1 | LMED105_00140 | LMED105_00130 | trbL protein; COG3846 Type IV secretory pathway, TrbL components. | COG5314 Conjugal transfer/entry exclusion protein. | 0.954 |
| EDM82070.1 | EDM82071.1 | LMED105_00140 | LMED105_00145 | trbL protein; COG3846 Type IV secretory pathway, TrbL components. | Conjugal transfer protein F; COG3701 Type IV secretory pathway, TrbF components. | 0.977 |
| EDM82070.1 | EDM82073.1 | LMED105_00140 | LMED105_00155 | trbL protein; COG3846 Type IV secretory pathway, TrbL components. | Conjugation TrbI family protein; COG2948 Type IV secretory pathway, VirB10 components. | 0.972 |
| EDM82070.1 | EDM82103.1 | LMED105_00140 | LMED105_00110 | trbL protein; COG3846 Type IV secretory pathway, TrbL components. | Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins). | 0.931 |
page 1 of 4