STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM81962.1Conserved protein with nucleoside triphosphate hydrolase domain; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. (289 aa)    
Predicted Functional Partners:
EDM84927.1
General secretion pathway protein F; COG1459 Type II secretory pathway, component PulF.
 
 
 0.907
EDM83310.1
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
 
 
 0.907
EDM84932.1
Hypothetical protein.
  
 
 0.899
EDM81970.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
      0.898
EDM83309.1
Prepilin cysteine protease (C20) PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.843
EDM84937.1
General secretion pathway protein G; COG2165 Type II secretory pathway, pseudopilin PulG.
 
 0.800
EDM82444.1
Twitching motility protein; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
  
 0.790
EDM85178.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
     0.775
EDM84056.1
COG3215 Tfp pilus assembly protein PilZ.
    
 
 0.704
EDM85179.1
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
  
 
 0.703
Your Current Organism:
Limnobacter sp. MED105
NCBI taxonomy Id: 391597
Other names: L. sp. MED105
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